I called the dealer on Monday and they finally got back to me today. They are going to replace it with the updated version under warranty. According to the tech, Harman added the holes to try to optimize burn but they ended up causing more issues. He said the holes in the side not only cause an erratic flame that can kiss the glass but also weaken the air flow across the igniter. He's been getting calls weekly for over flowing pellets on ignition and failure to ignite.
I have had this same problem with my stove. The burnpot has holes on the side and overflows with pellets and fails to ignite. The times that it does ignite with a bunch of pellets in the burn pot
the flame is huge and scorches the glass. This forum is great I am going to give my dealer a call and see if they will replace it. Ty