It makes the most sense to proceed as bholler suggested. The chimney pipe would terminate with a class A tee in the chase with a snout that passes through the granite via a class A thimble. This would get a trim collar on the granite face to make it look trim and tidy.
I would also remove the current hearth extension and wood storage box underneath. Then there will be enough height for the BK40 to top vent up 2-3 ft before a 90 into the class A thimble. The hole where the old firebox was can get a removable black metal cover, or something fancier if desired.
I would also remove the current hearth extension and wood storage box underneath. Then there will be enough height for the BK40 to top vent up 2-3 ft before a 90 into the class A thimble. The hole where the old firebox was can get a removable black metal cover, or something fancier if desired.